Software - Biology Directory - Biology Resources Online

William Pearson's package for fast sequence comparison tools.

An open, extensible web-based collaborative platform for microarray gene expression, sequence and PPI data analysis, exposing distinct chainable components for ...

DNPTrapper

A Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.

DNAMAN

Commercial software for DNA and Protein sequence analysis and manipulation. Available for Windows and Mac OS X.

Cytoscape

Open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other ...

Darwin

An interactive tool for peptide and nucleotide sequence analysis.

CodonCode Corporation

Offers CodonCode Aligner, a DNA sequence assembly, sequence alignment, contig editing and mutation detection software for Windows and Mac OS ...

CentiBiN: Centralities in Biological Networks

Application for the calculation and visualization of centralities for biological networks.

BioSoftwares

Provides information on bioinformatic algorithms, tools and services.

biOpen

Commercial Mac OS X sequence analysis and structure visualization software. [PDF]

Biomax BioXM Knowledge Management Environment

Project-centered, distributed software platform that provides a central inventory of information and knowledge. Users create, manage and visualize scientific models ...

BioMAJ

Workflow engine dedicated to bio-data synchronization and processing.

Bioinformatics Tools in Haskell

A bioinformatics library implemented in Haskell, including various utilities based on it.

BioEdit

Free Windows biological sequence alignment editor.

Biochemfusion: Enabling Biochemformatics

Software for working with post-translationally or chemically modified peptides and proteins including proteins as both sequences and chemical structures.

BioAfrica.net: Bioinformatics Software and Tools

Bioinformatics software applications and tools developed by researchers. All the tools are open-source and freely available online.

ARCiB -- Accessible Retired Computers in Biology

NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in ...

The ARB Project

A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search ...

APBioKnoppix

Knoppix based bioinformatics software tools. Bootable from CD.

ADF MAGE-ML

Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML).

Biochemistry And Molecular Biology - Software